import warnings import numpy as np from .. import functions as fn from ..colormap import ColorMap from .. import Qt from ..Qt import QtCore, QtGui from .GraphicsObject import GraphicsObject from .HistogramLUTItem import HistogramLUTItem __all__ = ['NonUniformImage'] class NonUniformImage(GraphicsObject): """ **Bases:** :class:`GraphicsObject ` GraphicsObject displaying an image with non-uniform sample points. It's commonly used to display 2-d or slices of higher dimensional data that have a regular but non-uniform grid e.g. measurements or simulation results. """ def __init__(self, x, y, z, border=None): GraphicsObject.__init__(self) # convert to numpy arrays x = np.asarray(x, dtype=np.float64) y = np.asarray(y, dtype=np.float64) z = np.asarray(z, dtype=np.float64) if x.ndim != 1 or y.ndim != 1: raise Exception("x and y must be 1-d arrays.") if np.any(np.diff(x) < 0) or np.any(np.diff(y) < 0): raise Exception("The values in x and y must be monotonically increasing.") if len(z.shape) != 2 or z.shape != (x.size, y.size): raise Exception("The length of x and y must match the shape of z.") # default colormap (black - white) self.cmap = ColorMap(None, [0.0, 1.0]) self.lut = self.cmap.getLookupTable(nPts=256) self.data = (x, y, z) self.levels = None self.border = border self.picture = None self.update() def setLookupTable(self, lut, update=True, **kwargs): # backwards compatibility hack if isinstance(lut, HistogramLUTItem): warnings.warn( "NonUniformImage::setLookupTable(HistogramLUTItem) is deprecated " "and will be removed in a future version of PyQtGraph. " "use HistogramLUTItem::setImageItem(NonUniformImage) instead", DeprecationWarning, stacklevel=2 ) lut.setImageItem(self) return self.cmap = None # invalidate since no longer consistent with lut self.lut = lut self.picture = None if update: self.update() def setColorMap(self, cmap): self.setLookupTable(cmap.getLookupTable(nPts=256), update=True) self.cmap = cmap def getHistogram(self, **kwds): """Returns x and y arrays containing the histogram values for the current image. For an explanation of the return format, see numpy.histogram(). """ z = self.data[2] z = z[np.isfinite(z)] hist = np.histogram(z, **kwds) return hist[1][:-1], hist[0] def setLevels(self, levels): self.levels = levels self.picture = None self.update() def getLevels(self): if self.levels is None: z = self.data[2] z = z[np.isfinite(z)] self.levels = z.min(), z.max() return self.levels def generatePicture(self): x, y, z = self.data # pad x and y so that we don't need to special-case the edges x = np.pad(x, 1, mode='edge') y = np.pad(y, 1, mode='edge') x = (x[:-1] + x[1:]) / 2 y = (y[:-1] + y[1:]) / 2 X, Y = np.meshgrid(x[:-1], y[:-1], indexing='ij') W, H = np.meshgrid(np.diff(x), np.diff(y), indexing='ij') Z = z # get colormap if callable(self.lut): lut = self.lut(z) else: lut = self.lut if lut is None: # lut can be None for a few reasons: # 1) self.lut(z) can also return None on error # 2) if a trivial gradient is being used, HistogramLUTItem calls # setLookupTable(None) as an optimization for ImageItem cmap = ColorMap(None, [0.0, 1.0]) lut = cmap.getLookupTable(nPts=256) # normalize and quantize mn, mx = self.getLevels() rng = mx - mn if rng == 0: rng = 1 scale = len(lut) / rng Z = fn.rescaleData(Z, scale, mn, dtype=int, clip=(0, len(lut)-1)) # replace nans positions with invalid lut index invalid_coloridx = len(lut) Z[np.isnan(z)] = invalid_coloridx # pre-allocate to the largest array needed color_indices, counts = np.unique(Z, return_counts=True) rectarray = Qt.internals.PrimitiveArray(QtCore.QRectF, 4) rectarray.resize(counts.max()) # sorted_indices effectively groups together the # (flattened) indices of the same coloridx together. sorted_indices = np.argsort(Z, axis=None) for arr in X, Y, W, H: arr.shape = -1 # in-place unravel self.picture = QtGui.QPicture() painter = QtGui.QPainter(self.picture) painter.setPen(fn.mkPen(None)) # draw the tiles grouped by coloridx offset = 0 for coloridx, cnt in zip(color_indices, counts): if coloridx == invalid_coloridx: continue indices = sorted_indices[offset:offset+cnt] offset += cnt rectarray.resize(cnt) memory = rectarray.ndarray() memory[:,0] = X[indices] memory[:,1] = Y[indices] memory[:,2] = W[indices] memory[:,3] = H[indices] brush = fn.mkBrush(lut[coloridx]) painter.setBrush(brush) painter.drawRects(*rectarray.drawargs()) if self.border is not None: painter.setPen(self.border) painter.setBrush(fn.mkBrush(None)) painter.drawRect(self.boundingRect()) painter.end() def paint(self, p, *args): if self.picture is None: self.generatePicture() p.drawPicture(0, 0, self.picture) def boundingRect(self): x, y, _ = self.data return QtCore.QRectF(x[0], y[0], x[-1]-x[0], y[-1]-y[0])